Definition checker

What is this?

So the idea is that you'd paste a SARS-CoV-2 fasta sequence into the "Input fasta" box (>header required).

Assuming that the sequence is aligned to the NC_045512 reference, the result should be a comparision of the input sequence against variant definitions from phe-genomics/variant_definitions.

It's a work in progress, still a few things to do:

• input validation
• calling definitions
• handling the required field

For a similar approach, but using Scorpio constellations instead, see Stargazer

It's possible to filter the preselected variants with the "def" URL parameter and a regular expression. Try undefined.html?def=V-22 for example.

Input fastaExample

Select

Definitions VOCs only Omicron-like None

Result Highlight mixed Fade N